NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0184321

Scaffold Ga0334987_0184321


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0184321 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1487
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036545Metagenome / Metatranscriptome169N
F063374Metagenome / Metatranscriptome129Y
F078638Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0184321_3_389F036545N/AMSNTTDETLKHFLKNERKEKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQNWDSDFNLEQFKRLQERMTFFKHLHPNWRLGSREVAEY
Ga0334987_0184321_386_754F063374AGGAMKEKIPKIKEKVLKTYPLKIRHTLKTMSKKFRRIDNYNLSFKSRHTLKIMSTGSEKTRKLKLFSQIPESYLEKNRFKSISQNPGEILRQFSRINEKELSLYTEILTKTVKVIPEESPHILIK
Ga0334987_0184321_767_1282F078638N/AMSSKTESEKLGGMTVPKRSHDPVIIQKKFELIAKLLTLVNSLPPGTEAPNYLIMRKIFSIKKEIHDLDLMWRLTDEFYFQEYGVLSSIDLINTRKPWNAAINTIRYMDLQRDLMTMREKFPEWEFTLSDVRKHSTCKCSECQKQKLLTAKEEPLSKDEPSSSSSSSTEGLD
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