Scaffold Ga0334987_0163257

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0163257
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1614
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F011281	Metagenome / Metatranscriptome	292	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0163257_3_317	F011281	GAGG	MTEFKQKVLTASVDRYVLTKTQCEMLRQDAEVIGMKRAPVLSKDGVTRTVSRTRTCSSCWIPFAKHYEWIYNVMREITEGINAEQWRFDIQGIQQLQILRYRPLQ
Ga0334987_0163257_511_657	F022371	AGGA	MFCLLDLGSIVWVIASFILYSSMTLSAIYCALFIIFKLIDYIRKELDL
Ga0334987_0163257_641_919	F021063	N/A	LQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYVLPT
Ga0334987_0163257_958_1551	F003304	AGG	MEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTDLDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTRLSNQIKEDEAKLVELGR