Scaffold Ga0334987_0141698

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0141698
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1773
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F011215	Metagenome / Metatranscriptome	293	Y
F029089	Metagenome / Metatranscriptome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0141698_229_450	F011215	N/A	MNLLEQMNADEFRKLLEFKEKFPLIGLDLVRTLTEKTHPIQLTLGECIDLSNAIGIPYGQYCNQIFGTFISKP
Ga0334987_0141698_447_896	F001981	N/A	MTYPTLITIPKSDICKAEIAQIAQQLTDRINDGEVNPIEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFSAFGAEITLKEGSLTPNYEEDPIYADIKAQLKAREELLKIAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFK
Ga0334987_0141698_8_232	F029089	N/A	MAIAQQNLGDLNDKLGLVPSYDELTTATLKADFLALLDKLPKEQAAKFIKDIDHMTPARFEKGIQFIQNQLAKP