Scaffold Ga0334987_0111598

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0111598
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2079
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0111598_395_634	F012569	N/A	MSRALDKFQGQYGFSVGTQGTATAGYWAIQMLENTTFSAISGRFDGTLTGVTIGSGNIIYGEFNSYTAGTGKVIGYIAG
Ga0334987_0111598_634_828	F010603	AGGAG	MSDEFQRSPIKAKNRAVRINGANFANVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0334987_0111598_825_1109	F004760	AGGA	MPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQFTPDSIKRATLRRKIK