Scaffold Ga0334987_0060791

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0060791
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3072
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F010599	Metagenome / Metatranscriptome	301	Y
F032149	Metagenome	180	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0060791_194_325	F045545	GAGG	MIKQIIMFFVCKIKSHNLVEVGACPFTGKSYNACLRCGVTIAK
Ga0334987_0060791_3_197	F003688	N/A	IPAPKNFGVQIIDNDYFLTIKLDEKKFLHMVHDEKILALQYVVKLKKALEDCGAIVLVTREAIK
Ga0334987_0060791_322_450	F032149	GGAG	MKKKMIILILSTISILVAINLFFASRLSQLSDLELFDIEEDE
Ga0334987_0060791_944_1306	F010599	GAG	MEMMLMIFFATLSFSFAIAYWATFDKLKKSNLLMAELFIKNKALEDLAFQIKDSMSISDNTVHKENFIKFLSDSRDWAFEYIEQSQKTIKEVSEELKNKGLTVYSDKLISLLPEMNKKNV