NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0054079

Scaffold Ga0334987_0054079


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0054079 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3310
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012570Metagenome279Y
F018535Metagenome / Metatranscriptome234Y
F041172Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0054079_326_574F018535GGAGGMKTHTDTSGAHWPQHLWPYTYTHGDTELLCFVDWEPGDRSTGYAGAAWLIHAYAGGVDVVDLLKDHIIKDIEEGAACSLSSD
Ga0334987_0054079_558_845F012570GGAGGMQTIDIDGTTYKVKFDRDPVELAKAARKAWKPKKPKDIRKFPTWTPTVSTADYIRRFDALNFLQSVDYIGANTESAAQYDPSIPLLEDLSDENAY
Ga0334987_0054079_833_1039F041172AGGAGMGKLKTAILRAQETADIIGANESLLWQARDALSAALYDLAEPDEGLVSAEKALHLINTYLMEVELCKQ

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