Scaffold Ga0334987_0054079

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0054079
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3310
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F018535	Metagenome / Metatranscriptome	234	Y
F041172	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0054079_326_574	F018535	GGAGG	MKTHTDTSGAHWPQHLWPYTYTHGDTELLCFVDWEPGDRSTGYAGAAWLIHAYAGGVDVVDLLKDHIIKDIEEGAACSLSSD
Ga0334987_0054079_558_845	F012570	GGAGG	MQTIDIDGTTYKVKFDRDPVELAKAARKAWKPKKPKDIRKFPTWTPTVSTADYIRRFDALNFLQSVDYIGANTESAAQYDPSIPLLEDLSDENAY
Ga0334987_0054079_833_1039	F041172	AGGAG	MGKLKTAILRAQETADIIGANESLLWQARDALSAALYDLAEPDEGLVSAEKALHLINTYLMEVELCKQ