NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0034197

Scaffold Ga0334987_0034197


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0034197 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4389
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031407Metagenome / Metatranscriptome182N
F034112Metagenome / Metatranscriptome175N
F073276Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0034197_1_384F073276N/AMSLVQLANIFEAATDAVNGLNGFSFGWASDRVRSQIYTEEGENNTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDVDTTLQITKWSNLIAYAERFILELGTTKTTNSIPDQVNLVLD
Ga0334987_0034197_1459_1755F031407N/AMTDKEKALIIIDLIEKITQEIIDKPMQRKKYLQMRGHLEKAVKLTGNGIKREWSRPPSLPLVSHAKTEPVPFVPTTKETNGDLLADNIPVVTKKARKR
Ga0334987_0034197_578_1459F034112AGGAMVIFNIGNKQIKYNYPETAEDITLEQYIYFAKFLLPEHPKVELEAIQYMNERDAVYQKILPYAKKLKVYTKNAEQIDVVCDLGKILQEQEVKDNVRRFLPSLISQWNELDKQLTTRLEIMDEVWEAKERYPYMAKVVSYFTGIPLDACFGKVADSLELKYLVYIYGKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPQGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKFTLDLQTSMLQRAMENLN
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