Scaffold Ga0334987_0029752

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0029752
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4770
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002689	Metagenome / Metatranscriptome	536	Y
F021067	Metagenome / Metatranscriptome	220	Y
F062448	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0029752_2601_2864	F021067	GAGG	MALKISIPTSNVGVPFTDAYARITNIFGNKDQVQYQVSVSANADAREANAQEVAQHAFYCATPQGNLMDGLYADLKLQVGFEDAQDC
Ga0334987_0029752_3901_4089	F002689	N/A	MDEMSTINATEARLSTHEEVCAIRYEQINARLKRIEGIMMKTAGVMILSMAGTIFSAVWILK
Ga0334987_0029752_4618_4770	F062448	N/A	MSDEKLNANTTLDKVLGYVDSPFKLFAILIMGVVAFAGYFLWQNQSFMMDA