Scaffold Ga0334987_0014035

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334987_0014035

Scaffold Ga0334987_0014035

Overview

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0014035 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7351
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005562	Metagenome / Metatranscriptome	396	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0014035_1834_1962	F005562	AGG	MTRPKIQIDDIGTTREMTDEEYEALLATGWTMEATDETPSPD
Ga0334987_0014035_393_716	F004670	GGAG	MLFTDLPLFRDTDPETSRQIKPLRVGSHRAILLRQYFYATLGLTDEEAGARAVLDGHDIKGYWKRCSDLRTLGLIQDTGTRRALLSGSQGIVCAITQQGIDAVKGMS

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