Scaffold Ga0334987_0003813

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0003813
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14418
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013412	Metagenome / Metatranscriptome	271	N
F013755	Metagenome / Metatranscriptome	268	Y
F059002	Metagenome	134	Y
F065771	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0003813_13865_14305	F065771	N/A	MGGVQKYLTRQVQEGEISKDDLLESQSKLSLLNQAPSLVLSAIAKGWIKYPDKLETITEEEETAKWIDTYDCERAYHNRVKGMTYREIGKLMGCGMNRVSAILHHGENIVLQRKMQSMGHTIVSIPSKATVQEHITNAKSKTKSKQ
Ga0334987_0003813_5403_5732	F013412	GGAGG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKPYAQRVQFRSFDADDMDAVLLLTEGTHVMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGHEY
Ga0334987_0003813_9038_9211	F013755	AGGAGG	MSDTPISDSTPHNIAELGLLCRRLERLAAVRLRYINQLETENDSMRADLLLWREAKP
Ga0334987_0003813_9617_9889	F059002	N/A	MNILNEIKNGISRLLGVHKTLETKEVLRTLKPKRIQKRGRGRPKGLKIPQQIVDAVRQADKSMTNKQLAAKYRVSYFWVWSVRSNKLRLN