Basic Information | |
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Taxon OID | 3300034061 Open in IMG/M |
Scaffold ID | Ga0334987_0002910 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16528 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (86.96%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001507 | Metagenome / Metatranscriptome | 681 | Y |
F002598 | Metagenome / Metatranscriptome | 544 | Y |
F015600 | Metagenome / Metatranscriptome | 253 | Y |
F025743 | Metagenome | 200 | Y |
F063708 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334987_0002910_12192_12353 | F001507 | GGAG | MSTTYKPYTIHELVEEIYEDNFSHFDFMENMNGGDCDCNLHMTMNTILKYWGE |
Ga0334987_0002910_12947_13102 | F063708 | GAGG | MNQLIEYMKIHLISLEQDLESNPESINVVDIEGQIYATRHLLSVAEGMIEQ |
Ga0334987_0002910_13099_13380 | F015600 | GAGG | MMNTALDPRLQKLIDLGESGTDILHGELKNLMLEAEKEYNEIATEEEEGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAIADRRKNGNA |
Ga0334987_0002910_5154_5363 | F002598 | AGAAGG | MATKLYTIESLLVGKNYRSRNRHFEGEIVSAEKRDGIWYGENTEAYLIGINAKGRLSTQYATIAVKVAD |
Ga0334987_0002910_7128_7370 | F025743 | AGGAGG | MTDTMKTMELVYADLLTPSQLMEGDLIKIDDDIVEVVSIEDDATGDNYVITHRNEYGEENEYTCNYEEVFKFYVFVEEDE |
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