NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0001265

Scaffold Ga0334987_0001265


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0001265 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24191
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (79.49%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F001464Metagenome / Metatranscriptome689Y
F013888Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0001265_18457_19116F013888GGAGMSTIGILPASGKASRVGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGDYNDTVLVGMPDTYIHGTQNNIYKEMNKVSGDLVLGVWECSEELKGRVGQVLLSGDKVVSSMDKTNNCDYSNMWGTMLFRKNLVRYIDPDLEHPGKQIQEWIDMSLDVRAVRPGGKYMDIGTLKGLKQLYKEME
Ga0334987_0001265_19476_20012F000369AGAAGMAEIELAQHFDRMNKVVEELLKGNSATQIASITGFSRKEVVEFIDEWKSVVHNDSSLRDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKAGALKLIADIEGKRIGMLQDVGVLENNELASQIAEAERKQEVLVKILKEVTSTCPKCKMDVAKRLSQITGIVEAVVIEDASGI
Ga0334987_0001265_3176_3658F001464GAGMARKTRSKTRKKFLYFFLNGKIHKVLKSSRAKDELIAWSYEDKKRMLYSYTQVEKSMENAYSIKDVSSLLNKHKVTIEDYILEGKIKVPARIYPIGNPDSSWSKFMFSHKDILDLHEFILEVGHSSKVPSRAEILALLKHNLILYTKTEEGKFVPVWKAE
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