Scaffold Ga0334987

Basic Information
Taxon OID	3300034061 Open in IMG/M
Scaffold ID	Ga0334987_0000919 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034061 Open in IMG/M

Scaffold ID

Ga0334987_0000919 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27992
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (26.83%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

27992

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (26.83%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027440	Metagenome / Metatranscriptome	194	N
F037195	Metagenome	168	N
F043895	Metagenome	155	Y
F044452	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000919_15142_15786	F027440	N/A	MSTKNLELVASFAGSVFQSDSNGNPQFATNERHVRKTAKSPERVVSFQSPILAVSDLQYYVKRGEALAEIPTEHVTKVKNEDGSVTETKRISNALSDLVQAELFDIAEDASEAYLSKGNTPDYFAAFIYGVSADRETEKSVLKKIEGIRSEIGSIVFALAGEWNDDTARSLGVSDKDAAVAKQANLIASLAQLLAKANELASAKAKREAKKKTV
Ga0334987_0000919_16629_16889	F044452	GGA	MTNRCLRCLQVIDADRKALGFDRCIKCAPQWQYKGALNFGHKTGGAIQPMHPDVFKVHKRVTARKAKGTNGAAFQQGTTNITIKDA
Ga0334987_0000919_7226_7672	F043895	N/A	MKPFMLGLTLLATETTIIALQQDFDAKLRAISQIESNDNDKAKGKHGELSRYQIKRSVWRQHFPSEKDQRHIPTEARRCAKAHLCWLELRLCLAQRVKNPQPRDVYAAWNIGLEAFSRRDYDFNRLPANIRKRSERFNNLYEEYRNNQ
Ga0334987_0000919_8096_8755	F037195	GGA	MNIFNPSNQQPQHDPAALLKQAESLLNKTERKQGWPYYDIKHAVQFAQLVIKLSKIPSKKATINSLTLRQQPQTIRARLSQGKAFINDKGVGVLQGTIDPDDIPIVDELKEKVQISVRKVNLIIELVEPIDNILDAMTPLLGGSDEDPFTFNEEIFREEIISFVNSGEVGSQASWQNYTSSAEKFARQLAMQDNTIIIETTPNELIAMKMSEEMLKGLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334987_0000919

Overview

Ecosystem & Geography

Associated Families

Sequences