Scaffold Ga0334987_0000709

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000709
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31458
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.18%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F039140	Metagenome / Metatranscriptome	164	Y
F041764	Metagenome / Metatranscriptome	159	N
F049635	Metagenome / Metatranscriptome	146	N
F071242	Metagenome / Metatranscriptome	122	Y
F071250	Metagenome	122	N
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000709_1148_1429	F039140	N/A	MKDKLNVWLKELLTSSTKVSSKRIVAIFVTINLIVLSYVATFTYYVCPIAMFDTLALLTGGLFGGTVIERFTKQKTNGTTKERSTEDSSGDLQ
Ga0334987_0000709_18523_19128	F036240	AGCAG	MANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGKNFTNAVASGTLEKSLKYRLQIKGQNINVSVYAKGKAGQYFLFRENGVNGTQKSQGAPYSFKKGSGSKPTKGQMSPMQKAIYDWMSIKGIRLRDTSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWKAFDYAMENIWDEYESKVVAAYQKDFTATIENQFNEIQ
Ga0334987_0000709_19185_20366	F028175	AGG	MLVASSDNVSNAGFRFVFDFGSFQVNVQPNAANKGILDLAPIFREQLQHDALLLTTSSDTESTSVAFISCTIKEGWLVDGVFTVSGSGMTDIDDVYAFLAEYQVSDGYKPNPNTRYALDGVDKYAMSERNVDTHKWIEAPSRGLSNDWVYVPTRVADYGVLYAPSETTLLADNDFDIVVFSSYDNNDDLIDTQFLPLADNPSIVNVIGAFYANVNLWGGLDLTGAKYYTIQFGKETTFPIYTPSSRVYCFYLVPDDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGTYNASSFTFNNYDRGVTDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVFIINDDGTQTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0334987_0000709_22968_23186	F071242	N/A	MEATSKEHLQNKAGAMVACLEFIKLNVKSESEFGKVANGKRKLQMWKHYAWKVTRISVNLAFWIFILYKLLF
Ga0334987_0000709_2375_2950	F021113	AGGA	MRKNILAISLLLIGTTAIWTVICWNWWGCTDKKNVQENVQKQDSVINYNAGEYDRLLQEQIELYKQLRTYEDAQSKAKTTYQRTRDIVLIRDTIVRVDVLRLVNSCDSVIASDSLVINNLKEQLNIEGEKIDNLQETIDAYEQKTDILTEEINTLTAEKKKLDKQKRRRNRALIVTSSVAILSTFVLSILL
Ga0334987_0000709_25819_25995	F041764	AGAAG	MNIEAGGFLKLELFNDDANLFLNALTKITNEGGKMGFKTYGLNEDELKVLNTILDNLG
Ga0334987_0000709_2913_3098	F082704	N/A	MPESKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIEFSLKFYVPESKVKLKEQKST
Ga0334987_0000709_5847_6455	F012871	AGG	MYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEEKAELIKENEMAVNDDSWRRMLDEDVQSFKQGKMTTLELRGVSMMRWLEESKRITLETFTDEEYNLCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGLRELYKLYLSKQ
Ga0334987_0000709_7875_8114	F049635	N/A	MNKQIYSTPFGRLVKSQFKTMHNFKNILRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTILINEEND
Ga0334987_0000709_8111_8404	F071250	N/A	MKKLISLEKRVENLLKKYKTLRNNNKALCVKVWEQQFEERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNHATNKKKEQLIKPLLKR
Ga0334987_0000709_903_1151	F027518	N/A	MNTEHEITLIHEQLQDMDKKIDRIYNVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLLVQFVLKFL