NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0000709

Scaffold Ga0334987_0000709


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0000709 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31458
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.18%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Associated Families11

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012871Metagenome / Metatranscriptome276N
F021113Metagenome / Metatranscriptome220Y
F027518Metagenome / Metatranscriptome194N
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F039140Metagenome / Metatranscriptome164Y
F041764Metagenome / Metatranscriptome159N
F049635Metagenome / Metatranscriptome146N
F071242Metagenome / Metatranscriptome122Y
F071250Metagenome122N
F082704Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0000709_1148_1429F039140N/AMKDKLNVWLKELLTSSTKVSSKRIVAIFVTINLIVLSYVATFTYYVCPIAMFDTLALLTGGLFGGTVIERFTKQKTNGTTKERSTEDSSGDLQ
Ga0334987_0000709_18523_19128F036240AGCAGMANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGKNFTNAVASGTLEKSLKYRLQIKGQNINVSVYAKGKAGQYFLFRENGVNGTQKSQGAPYSFKKGSGSKPTKGQMSPMQKAIYDWMSIKGIRLRDTSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWKAFDYAMENIWDEYESKVVAAYQKDFTATIENQFNEIQ
Ga0334987_0000709_19185_20366F028175AGGMLVASSDNVSNAGFRFVFDFGSFQVNVQPNAANKGILDLAPIFREQLQHDALLLTTSSDTESTSVAFISCTIKEGWLVDGVFTVSGSGMTDIDDVYAFLAEYQVSDGYKPNPNTRYALDGVDKYAMSERNVDTHKWIEAPSRGLSNDWVYVPTRVADYGVLYAPSETTLLADNDFDIVVFSSYDNNDDLIDTQFLPLADNPSIVNVIGAFYANVNLWGGLDLTGAKYYTIQFGKETTFPIYTPSSRVYCFYLVPDDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGTYNASSFTFNNYDRGVTDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVFIINDDGTQTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0334987_0000709_22968_23186F071242N/AMEATSKEHLQNKAGAMVACLEFIKLNVKSESEFGKVANGKRKLQMWKHYAWKVTRISVNLAFWIFILYKLLF
Ga0334987_0000709_2375_2950F021113AGGAMRKNILAISLLLIGTTAIWTVICWNWWGCTDKKNVQENVQKQDSVINYNAGEYDRLLQEQIELYKQLRTYEDAQSKAKTTYQRTRDIVLIRDTIVRVDVLRLVNSCDSVIASDSLVINNLKEQLNIEGEKIDNLQETIDAYEQKTDILTEEINTLTAEKKKLDKQKRRRNRALIVTSSVAILSTFVLSILL
Ga0334987_0000709_25819_25995F041764AGAAGMNIEAGGFLKLELFNDDANLFLNALTKITNEGGKMGFKTYGLNEDELKVLNTILDNLG
Ga0334987_0000709_2913_3098F082704N/AMPESKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIEFSLKFYVPESKVKLKEQKST
Ga0334987_0000709_5847_6455F012871AGGMYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEEKAELIKENEMAVNDDSWRRMLDEDVQSFKQGKMTTLELRGVSMMRWLEESKRITLETFTDEEYNLCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGLRELYKLYLSKQ
Ga0334987_0000709_7875_8114F049635N/AMNKQIYSTPFGRLVKSQFKTMHNFKNILRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTILINEEND
Ga0334987_0000709_8111_8404F071250N/AMKKLISLEKRVENLLKKYKTLRNNNKALCVKVWEQQFEERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNHATNKKKEQLIKPLLKR
Ga0334987_0000709_903_1151F027518N/AMNTEHEITLIHEQLQDMDKKIDRIYNVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLLVQFVLKFL

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