Basic Information | |
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Taxon OID | 3300034061 Open in IMG/M |
Scaffold ID | Ga0334987_0000401 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 39814 |
Total Scaffold Genes | 62 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (87.10%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006842 | Metagenome | 363 | Y |
F017469 | Metagenome / Metatranscriptome | 240 | Y |
F026822 | Metagenome | 196 | Y |
F046192 | Metagenome | 151 | Y |
F067515 | Metagenome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334987_0000401_33021_33197 | F026822 | GAG | MAEPRYLSGDEYALNGVELDIVKCKECAGEYDYAQYHSYTCSDCEDKMIARERERVNG |
Ga0334987_0000401_33360_33494 | F017469 | GAGG | MKTICQFCGWEIRKPEWYNSYDQSYACDDCLMDQAVEREKEKAI |
Ga0334987_0000401_33491_33652 | F006842 | AGGAG | MREEKRMKARPAMCGDCLTFLSDCAHGADYLQDLMTSAERLIQLAKEREELTK |
Ga0334987_0000401_34584_34841 | F046192 | AGGTGG | MAKTFKTSTMLADNSGAVWVEAELTQAQVKRVINSYKRAGIDLTPYGSPDQVIKQVEEINAFFANDERSRSFVEAGKFQVIGVGF |
Ga0334987_0000401_34920_35243 | F067515 | N/A | MKYSITNETLKSRAQDIQKEFETGGASWEGVALEIARLELSLEAIKKDGLGEEIGIDLGSWDGAYCASEEDITHYDPKCCQHDYESGCPCCLGDCGDCNDVGNIQVI |
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