Scaffold Ga0334987_0000387

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000387
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40351
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (29.55%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F061533	Metagenome	131	N
F089880	Metagenome	108	N
F097170	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000387_1286_1573	F015061	AGGAG	MSEQTPQNETSKAVMEAFTFIKSGDETLNERVHAMGSLLHTASMMVIRSESRKGEGFECIKYLELAFMYYQNAQFRKRFDEPEKEKDNQPLLFTP
Ga0334987_0000387_1577_2563	F089880	N/A	MKKKELELFSPTQEGVIVPLSTYLRHMGEFVKTEWPGINITEAHIKKAWGKLQKNEYLGDDAPDEMLEMYEKMSADLDMAEEMAEERLALPAVEEPENIEELIDITIEEPVNESLALVESVKDGLELSSFTQKFDIGSGMTQCVPKGKVEMKDWVAAFAFGLTLESGAQWIIGDSVVALENAGHEDVVNQLCSNFKKSYSTVSGYARACRVFTAEMRDATLPFTVYREIGNANFGDESTKKQKELLDAAKTEKLSSTEVRNRVRSEQGKGDKPMSHRFLLLNVGNFSNSEVLRSMPEEVQEHQLLIDLGDKSWFDPAEGEWMKFLKEQ
Ga0334987_0000387_16092_17054	F014513	GGA	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRAWTTQEEYVQICCVNDCFTLPARYEQIKLAWIGNESASLADEWFNATNAFALHADHSCHRGIVEVGGLHVLFRDYTTHPYQIGVMVEEVEDIGVELMFEAQDQYDTYHKVKVTTANPPTLAKSDLLVKGIRSVTKPVTKGRIRVYAYDTALEAKTLIAIYQPNDAHPTFRRFKAPRTCECITLYASKKYFDLTDPKELVEFIPDAMIYAILALNSRENRKAQEFLSNLSLAVQEQEKEMEGLEIPTCAPLRIANYSRAENLIGSDLLSPSPNDYFLYR
Ga0334987_0000387_17748_19592	F097170	N/A	MPAEGSIFDGFTSIVAQDADTHPSYLPESFVSESVNRTFRGGINRTRPSIRNIPIKVGEGQSETIVNDIQNGNFQGAYPYRKTKYESADGILLSVSGVIYFLKIINNFATAYKLIDGNDPGMMHTWFVQAEDRVYIQNGYQNAIAWDGDLNTPAYRLNPFKQQMPIGTIMEYAFGRVFVSDRFNQIYASDIIYGNGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMRVMPQIGTNLRGQGELVILTGNGAFSMDVSLPRSEWNTSNIQRISLLGRGCVSPYLGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVSNDTPWLKQFASTMFFDNYLISTVSPQTYRATNAEGLNRYHRGMVVLDLDQSSSPAPDAQLQFRWNGIWTGIRPTQLLTALIQGEKRGFGFSFDADNKNRLYEFTIAQGDDYGPNGSRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVQSSAEFRADSNPCWSELKVPTTFGCDPCSPQVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN
Ga0334987_0000387_2606_3421	F061533	N/A	MSNQLEGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGDIEIDGQTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHETYEGKNGKVDRDIIKVTATGKVEFDLPSEEPARVTSAPKVIVTDNPLKAIDNIVEMHQYIDSLVRHAYKDVVDDEETLRAYVSSVFIETNRKGIYYTKTEKVEEPKVEEPTKLDPKDWASVIVPSGSHKGEKLGEIGKPALTKLYQFYLEKGFTTPFAKCVEQAAEDFNLDAPIGDDEDNIPY
Ga0334987_0000387_29802_30068	F027487	N/A	MACFTALDYRNKSYPFVQTIAAAAGIDPISYGCYDAATDAAKLYQFYVGLATIGGLDPVTQNCFVQKTEDQQYFLTNEALSAALNPVT
Ga0334987_0000387_30795_32204	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCTPFRSITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDQAWFVPEHTLNNEAGYDLCALRVKMAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNAGLAPFNEADPATWARLVRVPRYIKIVQENGCSYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKSLYGSCCEVQSYIVPENNQDCYSCAGVGDIVVPS
Ga0334987_0000387_36541_36918	F021128	AGG	MKLKNKNLAPVGGWYWKYEIKRDKLTFPAIVYGSTWSSLMQNIQKDYRSNGVELPSNIEQMVEDQICQRQPSERCWYADGLGDRIAQAIHTVAAATDKVLGTKLEHKARGCSSCNKRRTALNKLS
Ga0334987_0000387_36955_38805	F023326	N/A	MSRVFSSNKGIQKYGMRFPENLDELGIELYCYAISHNKYGKKYCIEHNINLNDFKLLSPSEHFLNAVKLQWPTEVSIYNRGYANTQLIRTLDELCSNTDICLAGAASMGKSFPVALWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQIGKLVDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITARTNLASNNDKVFIGIGNPSTGDNPHTRWCLPKGGSNFDSVNQNMDKWETETGVCLFYNGMKSPNFQAPEGEPSPFPFLMDREKQSDMLRLSYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTVGGDRCVLTIAKLGYVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVALCRTAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDASGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYYYSAYHAFKSRVIFGIDPASDLARELCLRRYTIKSKKIAIETKDELKGRTGYSPDLSDSLIYALEMARRNGLIFIGNDKPVPTNRFWARDEKPVESFADDDYGSDDNGDW