Scaffold Ga0334987_0000259

Overview

Basic Information

• Taxon OID: 3300034061
• Scaffold ID: Ga0334987_0000259
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48617
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (54.10%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F042808	Metagenome / Metatranscriptome	157	N
F072266	Metagenome / Metatranscriptome	121	N
F090287	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334987_0000259_23154_24242	F034904	GAG	MRKTLAQAKNSTIPQAIGLATCDDRFLQLLNEAQERLAEMGKWWGTYKKLRICVTAGCITWPREVKTVEAMNVCGDNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGIVYQYRDFTGASKIRIYPDLTADAGKRVLLQGLDVNGNPIRTLDAVTGEYVWGEYVTLPNPAVTAYVETVSVFKQPGLTGAQKPLTQGSLTIVAVNQSTGVQTQIAIWAPSEQNPEYRRTYLINMPQVCGGTSGCNATAENDCIDHGDGCVPPDEACTNTVIEAIVRLEFIPAVVDSDWLFIGNLQAVKHMMKAIQKEDRNQYPEAEREIQLALRALRNELEAYSPNERSVINVQPFGSAKIEYRFGGFI
Ga0334987_0000259_28105_30144	F042808	N/A	MVAEKNRIVDGLLTSEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWTKILTFDDQDAVYNGAYYNRAVKNAFEQGFFQGCGTYTSDSGEPFLFAAIGGKVFQIDISNAFKVTDLTPINFTFPVSTRGRVSNVATYVCSAPHGLSPGMVVRLPEPPGTFFATGFFGDFVVETVPSPTTFTTYSPGIDAGPLLGPGFTGYQLATNNPQADHVFFQQAENWLIIQDGQSQPYLYNGSTLRRAAGDEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPAYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNHESIVPVNGDLIFRAQDGIRSLIYARRDFTEWGNTPISRQMVRALAYDTEYYLTAASAVNFDNRMLMTIQPKKVNNRGIAHNGIVVMDFDLVSGMGRKLPPSWEGVWTGVDVLQMVTIRVKRTDRCFLFGLNQGNIGLFEVTKNGQFDFDGFDDVPIDWTIETRSLTFAEPASKKRLISAEQWYDQVMGNIESKVYFRANESECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPAARSRIALPQPPDKCDSQTGGFTRDGFEFQLRYVNTGRFRLKRVAMVAQRLQEDLYGDLSRVACPLLSA
Ga0334987_0000259_35305_35574	F072266	N/A	MILSPKQEFQRSKERVQALERMLDTVELQAALLAAFNNLCWNLPSSDNPQHGWNANCKRAGARALIEELQNLAVIRETPKPTNANLEPT
Ga0334987_0000259_39235_39669	F090287	N/A	MSLVTFSSPKMPSLTSAEIAALSGCFDCLSPGIKETYMVTLLQQILAASPGAPLTTTSPGGLLTATATSAANPLRKKFTLQNQKNEELFVKFGTGATITDYHIALAPHNPGSKHSDPLMLDGYIGALSVAPTSGNPSYTFAEFV
Ga0334987_0000259_41288_42889	F028149	AGGAG	MATGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGLIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTTAWEGVNGSSCSGQPCDPPENKIGWGWTRNEYALEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGSLVGGNAFACASGLPPINFSWVGAGYTTLRVTDNAAAPITAASLGKLTPEILQSRVTRQYFLGAIQAGKEGYDSLQLHTDKDTFRYLQKTNSTLYDAWRFGVFAPAAKEFFKYGFMGFVGDFMVKVLQFPLKFNATATPGNYTLVLPYKNVAATEGIKSVFNEDYDRAQYQISYVNNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGAPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIVPVCEADPGNPAQSYSSVDPVCGTTVQFTAIPNDAGLYNIGTTGILCNDNIVTNAGISAVDPAALVVALQAAWDAEFGASSGTWSVVSGNVIQLSGGYPTDSESVPCTNVTLEFQI