NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334983_0000036

Scaffold Ga0334983_0000036


Overview

Basic Information
Taxon OID3300034060 Open in IMG/M
Scaffold IDGa0334983_0000036 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98693
Total Scaffold Genes166 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (9.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021291Metagenome219Y
F060617Metagenome / Metatranscriptome132Y
F089839Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0334983_0000036_1547_1684F060617N/AMTEEEKDIRIKELEEFLEEVIEHPYMCGSPIWEEGWELLNKDKDE
Ga0334983_0000036_4306_4518F021291N/AMSTHKLNAIKNTFPDLDLEIQKEVEPQTQLEELNDYLRMLADMENVTIRRKIMLLEGYTNLVVKRLKNKK
Ga0334983_0000036_87986_88180F089839N/AMENVEKKVLFKYDEPVTIGEHKVKAIRQVPRGIRFRTENGPVLKEVETKETWTEEELHELINKK
Ga0334983_0000036_89341_89535F089839N/AMENVERKVLFTYEEPITIGENKVKKIKQTPKGIKFKTEDGPVLVEVEAKETWTEEELHELLNNK

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