Scaffold Ga0334983_0000036

Overview

Basic Information

• Taxon OID: 3300034060
• Scaffold ID: Ga0334983_0000036
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98693
• Total Scaffold Genes: 166
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (9.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021291	Metagenome	219	Y
F060617	Metagenome / Metatranscriptome	132	Y
F089839	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334983_0000036_1547_1684	F060617	N/A	MTEEEKDIRIKELEEFLEEVIEHPYMCGSPIWEEGWELLNKDKDE
Ga0334983_0000036_4306_4518	F021291	N/A	MSTHKLNAIKNTFPDLDLEIQKEVEPQTQLEELNDYLRMLADMENVTIRRKIMLLEGYTNLVVKRLKNKK
Ga0334983_0000036_87986_88180	F089839	N/A	MENVEKKVLFKYDEPVTIGEHKVKAIRQVPRGIRFRTENGPVLKEVETKETWTEEELHELINKK
Ga0334983_0000036_89341_89535	F089839	N/A	MENVERKVLFTYEEPITIGENKVKKIKQTPKGIKFKTEDGPVLVEVEAKETWTEEELHELLNNK