Basic Information | |
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Taxon OID | 3300034060 Open in IMG/M |
Scaffold ID | Ga0334983_0000036 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 98693 |
Total Scaffold Genes | 166 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (9.64%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021291 | Metagenome | 219 | Y |
F060617 | Metagenome / Metatranscriptome | 132 | Y |
F089839 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0334983_0000036_1547_1684 | F060617 | N/A | MTEEEKDIRIKELEEFLEEVIEHPYMCGSPIWEEGWELLNKDKDE |
Ga0334983_0000036_4306_4518 | F021291 | N/A | MSTHKLNAIKNTFPDLDLEIQKEVEPQTQLEELNDYLRMLADMENVTIRRKIMLLEGYTNLVVKRLKNKK |
Ga0334983_0000036_87986_88180 | F089839 | N/A | MENVEKKVLFKYDEPVTIGEHKVKAIRQVPRGIRFRTENGPVLKEVETKETWTEEELHELINKK |
Ga0334983_0000036_89341_89535 | F089839 | N/A | MENVERKVLFTYEEPITIGENKVKKIKQTPKGIKFKTEDGPVLVEVEAKETWTEEELHELLNNK |
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