Scaffold Ga0335024_0400625

Overview

Basic Information

• Taxon OID: 3300034051
• Scaffold ID: Ga0335024_0400625
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 685
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp. TMED11 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F104491	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335024_0400625_2_685	F104491	N/A	ALLSVFQSLTKVLKDNNQHLQSSDVTEPTKFNGLDTQWDDFYLQLRTYLEAKGWLDTFDHKTGPGTPGFNTEINKKIYNKLLALCRKGTAGTYVTKAASSNGWEAGKYLIERYEGFSKQRAHSLQNLIENIRHIHGTNMTRHIDKFERICGMMAHNNPDKPPTDEDKVDWFLASVTEKTYDSVHAGCTDKQLDGTLTFARVVKLYTHRCFQKYPHFQLDDLTQDKKEL