NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335024_0308017

Scaffold Ga0335024_0308017


Overview

Basic Information
Taxon OID3300034051 Open in IMG/M
Scaffold IDGa0335024_0308017 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)811
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017790Metagenome238Y
F096631Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335024_0308017_3_497F096631N/AYLKNKTSANFLGFSKDYINKEIEITTDGVYSYQPINVIYHQQILINIDGDIQMSINNLDNKNSDILEPSSVLFMKPIDINKNQLIMYDNWDGNASFQYKISQKDTINQINIRITNQDNEEISTLGDWQLTMQLERHDEDITESLLTQIKEYISYIFLIIGTYLS
Ga0335024_0308017_670_810F017790N/AMDSVCDEIKEDMHKIEEDSKKIDCYAILDLIGHCIQCFIDSIKCCFK
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