NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335024_0131578

Scaffold Ga0335024_0131578


Overview

Basic Information
Taxon OID3300034051 Open in IMG/M
Scaffold IDGa0335024_0131578 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1372
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011997Metagenome / Metatranscriptome284Y
F088286Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0335024_0131578_566_889F011997N/AMSEKTVFDVERAKFEGFGTYKLPIEERVNEIMEATKKEYPNIDNYLLWLCAVDYVLEEKGLKKDNDDGVKMYEEYVKQKKIFIYNTVTIEDETPLYNVLQEVSCNEA
Ga0335024_0131578_934_1371F088286N/AMIEEIKLTGLDNKPIKTTKKPPPRSINENLPPCYFTSIFIGSKGSGKTYSLIKLLKNYEKYPIYDNDEHKLDIRVIVFCPTIMSVANPIYDTLKYLDEDDIIMDYSDNKLLDKLDEIEKEKEDIENYKKYIEVWKKYLKIDENINL

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