NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335023_0007978

Scaffold Ga0335023_0007978


Overview

Basic Information
Taxon OID3300034050 Open in IMG/M
Scaffold IDGa0335023_0007978 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6241
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.56%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032657Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0335023_0007978_5332_6072F032657N/AMEIQKHLNQLPQVRNEWHPLKSGSIADNEIADAFKGSKLNLISPVTLKENLAYIFTLLGFTKYPDKDEMMIIEDFIRTSYPLYTIEEFRIAFKMAVQGKLDCSTEHYEKFSPKFIGQVMAAYTKKAVEVRKMIKPILSPIEPPKLSDEDIVSFTQKEWLQSPKNDFNRVFNADKVFAILLRQGKLKFEPSEMLQIVRMVREDNLLKLNKLYGQDAKEFSKRIKDDNFIDSQCKKLALVKYFENLSG
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