Scaffold Ga0335023_0003343

Overview

Basic Information

• Taxon OID: 3300034050
• Scaffold ID: Ga0335023_0003343
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9607
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010620	Metagenome	301	Y
F017298	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335023_0003343_5284_5736	F010620	GAG	MRHLLPLLILSLLFSCSDAKKAQYHYKKAVKFGLSIANDTIKINTIDSFAVIRNDTIRYEKFITTKDTIIQILEMPKTRYQTRIEYRYKTKVLKQDVLKYKYIYREAKEQRKAVQITKSKTNWMLLVWGFIIGVLLSFITRLLLKLYLPF
Ga0335023_0003343_7422_7592	F017298	N/A	METNENTFIPTTFSLKRKMQWWRDQSCDGDKGGSFNLELYLDYLSEQDFNEIKQEK