Scaffold Ga0334951_001130

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334951_001130

Scaffold Ga0334951_001130

Overview

Basic Information
Taxon OID	3300034029 Open in IMG/M
Scaffold ID	Ga0334951_001130 Open in IMG/M
Source Dataset Name	Biocrust microbial communities from Mojave Desert, California, United States - 47SNC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9299
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042667	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334951_001130_3637_3786	F042667	GAG	MFGKWSVILRVDDDETVYSLVSGEHPEAVFTGSKKQSLKYIRDISGGNE
Ga0334951_001130_8202_8351	F042667	GAG	MFAKWSVILRVDDDETVYSLVGGEHPDAVFTGLKKQCLKYIRDISGGNE

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