Scaffold Ga0334949_000311

Overview

Basic Information

• Taxon OID: 3300034027
• Scaffold ID: Ga0334949_000311
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 45SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27578
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094635	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334949_000311_13808_14524	F094635	AGGAG	MALGSKSSTNGHRTSHHSPGTDAASGISRVLVLVLTVPARLINWLTTPPGNAIMIGLGVLYFGAVSAEGYWQAMNANNPAFVPKPFVNDGADLRLIFTAFIAPSFWMASVVSLIVQGIQAFVLREIDIAKAKAEYEAIKDYRVPDPEEGQLDLAEYRRRRFKSVGMRTVRTRGALIALTYAIDAGIAFWNYPVIGQSTGEMIINLVWILASIFGTEAMINLFLNSIAPIKPQVEVLPN