Scaffold Ga0334946_000078

Overview

Basic Information

• Taxon OID: 3300034026
• Scaffold ID: Ga0334946_000078
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61227
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (75.47%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047898	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334946_000078_16325_16636	F047898	AGGGGG	MNLVGTWNLEVATPFGKHPATLVFEGTGGALSAHITSRLGDAPLEGLTVTHDGFDARVQMQVQGKPYEAGIAGQVENNDSISGTIKVKLAIAPTIRYTGTRSA