Scaffold Ga0334946_000049

Overview

Basic Information

• Taxon OID: 3300034026
• Scaffold ID: Ga0334946_000049
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97675
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (78.63%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073080	Metagenome / Metatranscriptome	120	Y
F103859	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334946_000049_16374_16574	F073080	N/A	MNERQQANIAYYLERLEYWKGRRPVQSTARLLAARDADEAHPLRTEKEATEVVEYLPRLERERTAT
Ga0334946_000049_22620_22877	F103859	AGGAG	MGMNERQQAHINYFLERVAYWRGLKRDYWAARMLGARDADQAHPLRSEEEGAEVFEYLSRLEREEGVGTADRDGPAPADAVPPRP