NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335021_0008042

Scaffold Ga0335021_0008042


Overview

Basic Information
Taxon OID3300034023 Open in IMG/M
Scaffold IDGa0335021_0008042 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7485
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F010155Metagenome / Metatranscriptome307Y
F011844Metagenome / Metatranscriptome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0335021_0008042_1292_1723F011844N/AMAQVLGSLQNIEIDVAGGTSYKNLVCLRTSSVNTTMDATVEQTNCGVLTSPSEPQMNLDFDAICETSPSIAQVSYEDLLSAMVNKTIVAVRVQNPVVSGSSAGAAYYHAFSGYITDLTLNQSTTEFINFSGTIQSTGALDVVA
Ga0335021_0008042_2181_2390F004112N/AMLRGYNEKKVDNYKQTRLLMFTMVRLMGDPKTAPKTPEALWQLPGDEKEKPKDEEYREVFNRLTKWQKT
Ga0335021_0008042_854_1285F010155N/AMLDCSNNVRVIYVNALNGNLSYNGKDVPVYGQTPFDTTPQNYVVIGNITETSDNTNHSFGNNVEVVVDIFSEQYRVNDLGVVDSIASQILNILIPDTQVDGFDDANFEVFPIGRSSSRYLPLQDGDNYVARKIITINNLVNQK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.