NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0115720

Scaffold Ga0335005_0115720


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0115720 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1734
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019140Metagenome / Metatranscriptome231N
F021113Metagenome / Metatranscriptome220Y
F082704Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0115720_2_511F021113N/ACWNWWGKVHANNATTELQKQDSIINYNAGEYDRLLQEQIELYKQLRTYEDAQLTAKTTYQRTRSSVIIRDTVTIVDVIRLVNSCDSVIASDSLVINNLKEQINIEEQKIDNLQETVGAYEQKENILTEEINNLAADKKKLEKQKKRRNHALIVTTTVAVLSTFVLSILL
Ga0335005_0115720_483_659F082704N/AMAQSKTKKGICVYLHKDLWNEIDEKRGENSRNIFLSEAIQFSMKFFVEESKVKLTEQK
Ga0335005_0115720_640_864F019140N/AMKPTPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMTKTKEDGTEQN
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