NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335005_0030666

Scaffold Ga0335005_0030666


Overview

Basic Information
Taxon OID3300034022 Open in IMG/M
Scaffold IDGa0335005_0030666 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3717
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F025485Metagenome / Metatranscriptome201Y
F051709Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0335005_0030666_143_385F051709N/AMIPNRERLKIEVAIRPHILAVDVINIELQKVNGSIERKWRQLDDFSASWSYTMWQNWKDAMQGEISYREYLLIILEAYKK
Ga0335005_0030666_1902_2315F013634N/AMSNCNKYNNMPVAIGPLLGAGLGALQQGKIDRALSGDKVYTKPKTIFGKLIGGISGRTAASEASASVKTAPIDERTYNALVPNTAPENMNSYKQTPITGGFSFGGEATKKTYLPFYLGAVVLGIFFFMRKKGRGRRR
Ga0335005_0030666_2464_2673F025485N/AMMENVRKLLPIIIGGIVAIAVFFISRKVRQSSGNNQERSQILEKAREAKLAKSILRKTDEQDDTQSIAI

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