Scaffold Ga0335005_0003452

Overview

Basic Information

• Taxon OID: 3300034022
• Scaffold ID: Ga0335005_0003452
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11896
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003308	Metagenome / Metatranscriptome	494	Y
F019134	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335005_0003452_10958_11554	F003308	N/A	LYDAYTWIEDTCQAAQDLINGFLWFDSAPVVGTALVSNVATVMVANPGIFTTGQSVTIAGAGSTFNGTYTITGTIPFSTGTANILPAFNMQLNYWQFPQGYSFIQYAKTAADQNFRRVLPYGTMTGDDTKTATYANTPAINAAALMLAENIWTSRFSTQNGGTSLDGYSPSPFKMSNTLMASVRGLLAPYLSPAGMVG
Ga0335005_0003452_11688_11894	F019134	N/A	YVDKNFAATTTVDDSAIILAPEAFTVYQSPQAYMSVNVVSNLQIQVAIYGYMATIAKMPKGIIRYNFT