Scaffold Ga0335004_0027728

Overview

Basic Information

• Taxon OID: 3300034021
• Scaffold ID: Ga0335004_0027728
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4082
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029677	Metagenome / Metatranscriptome	187	Y
F034149	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335004_0027728_3865_4080	F029677	GGA	MNELGKSLQEWWDSDACKQLQKESEEAKQRAVGKYHMLSEEDKIDMVQAICYIMCKAEQEGCSHRALMDALG
Ga0335004_0027728_502_1083	F034149	AGG	MSISQGLVMDADEKPGFEILHLSFRKQESEAFSGASINFYHGNIVFRLTDESAVGRMQYYLEENEKLRVAPDEDLLNSYYKDLHFVFDKSEELDEEKDGEKYTPLQILNKNGIKDEDVFIYAYRRNMMPLHDFIQYHEKFDVYQMREYFQDTPVVRGIIQYLQDMKDGKENPSRTVYHEQFLNTLENLCWWWD