NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335004_0001933

Scaffold Ga0335004_0001933


Overview

Basic Information
Taxon OID3300034021 Open in IMG/M
Scaffold IDGa0335004_0001933 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15613
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (30.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006262Metagenome / Metatranscriptome377Y
F017997Metagenome / Metatranscriptome237Y
F018171Metagenome / Metatranscriptome236Y
F038227Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0335004_0001933_10762_10992F038227N/AMISLGIALNRLLPGQAGGTDLPVLRRDLLQEDEFFILQEDGIGKIVITFGTFDSLLREDAGFLFREDDGKLQIQSN
Ga0335004_0001933_15186_15593F006262N/AMFTFTVAIKRSYLRAVYSTLGGVTLLAALSAKSVAASSVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLDDYDLAVYYLNQEGVASPTDTQIYNKMMAVVLVAATSYGGDFSNFRREASYRVGMS
Ga0335004_0001933_2907_3386F018171N/AMANTQGSKYIFGSPATLALYDAAGNLVVTGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTVNFIPANATSVANALLSAALPDVNGTCVISGAPVVEVGGYTDAINAATGNRWIYAGGGSIKTTATGKATGTITLKRYTNITATGAATAL
Ga0335004_0001933_8676_8819F017997AGAAGMNVIEQIVTAILKWLTGLAKTQPTAEDAKPDPELKQKLLDRIDRSGI
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