Scaffold Ga0335002_0052865

Overview

Basic Information

• Taxon OID: 3300034020
• Scaffold ID: Ga0335002_0052865
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2914
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F057983	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335002_0052865_2160_2561	F057983	N/A	MTDQKIDILFSTVEKINKRLGSIEAMMKATTKKINDIEESLESSGDDSEWEGFGPKPEQQPFNPNAETYTLELGHGPYTIRRGDDEDDKTWAGRKKHLMNQRVGFLNSSGVVGTPEQEAYLKETYDRLTAHGR
Ga0335002_0052865_459_701	F002227	N/A	MKLTIQSKQNAQTIIDLFNAIITGEVKEHGATPLSIYDDDKHICSVVAANGQQILELVIEREDGDRIMPRFEGNPDLETL