NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335002_0019537

Scaffold Ga0335002_0019537


Overview

Basic Information
Taxon OID3300034020 Open in IMG/M
Scaffold IDGa0335002_0019537 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5075
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026503Metagenome197N
F063471Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0335002_0019537_380_1345F063471N/AMYSNSAAIFRGDIAGVVEQAKDFEAGLIGTAVMPILDVPVRAGQYPSFVLKEGQLLKSDMKNRSPYSAYARGTRAFVQDTYTALEYGYEEAVDDTVTLDVARFFDAEVIAAKLAKRKLLLAHELRVAAKIFDSGTFTATNSGTAYTTANLATFDVGADVQEALDRLLSKGESTTNTKVVIPYPVWTRIRASTKFQNRLRGTGLSTDTILNASTQAAAEVFGVAEVLIGRASYDQAPEGVAFSAANAWANTFIWVGSVTQAGAGYFGGGAGFTLNWSEYGPAIGVSTYREEAIKSNIVRASQYTAEKVVNANAGQLITTQYS
Ga0335002_0019537_3805_4602F026503N/AMIEIEASFSRLEFQLAKLANAAKVDLGLVIKEEAKYAIQTIVKFTPPKQKAQGVNAVRADFSSLADPLVYQNLQAKATEGGFYKSMARYVRNRKVEKLRALLRNPNLSYYYGMRLLESEDAIYQYKKEQQTSWRKIKGRPQVLAFGLDFRRARKTMEDRVGWTVSGWNSSAKVTGARYKKFSDKLKPQANGNKLFGSVQSSFGPQPFIKATAHNVKIRNYQRMIDGAINSRIATTTKKVAAVLANSAVNLGFTRVGGAMPIKTAA
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Institute for Fundamental Biomedical Research
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