NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335002_0002740

Scaffold Ga0335002_0002740


Overview

Basic Information
Taxon OID3300034020 Open in IMG/M
Scaffold IDGa0335002_0002740 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14505
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001806Metagenome / Metatranscriptome631Y
F003687Metagenome / Metatranscriptome473Y
F059883Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0335002_0002740_10086_10328F003687AGGMSPASVEQLLIQDARLLARRDAPAIDQEIESARQQALEIFYQWQDGLVQFQDLIPFVIVLEKKVDLNRALLKWEQEHMMD
Ga0335002_0002740_12325_12531F059883N/AMTEKNQRYHLIINVDEKYAIVNALAFYHAHHTLGESLDEDEREQYALAFKEDGATLVDTLATKVANTF
Ga0335002_0002740_7892_8104F001806AGAAGMDAGVRQKRVEAMEKIKEKALDMAKTGRDSLEVRDFVTEAKKELAYELPDEDAFRKAVGATKAYMSKKQK

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