Basic Information | |
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Taxon OID | 3300034020 Open in IMG/M |
Scaffold ID | Ga0335002_0002740 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14505 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (30.77%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001806 | Metagenome / Metatranscriptome | 631 | Y |
F003687 | Metagenome / Metatranscriptome | 473 | Y |
F059883 | Metagenome | 133 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335002_0002740_10086_10328 | F003687 | AGG | MSPASVEQLLIQDARLLARRDAPAIDQEIESARQQALEIFYQWQDGLVQFQDLIPFVIVLEKKVDLNRALLKWEQEHMMD |
Ga0335002_0002740_12325_12531 | F059883 | N/A | MTEKNQRYHLIINVDEKYAIVNALAFYHAHHTLGESLDEDEREQYALAFKEDGATLVDTLATKVANTF |
Ga0335002_0002740_7892_8104 | F001806 | AGAAG | MDAGVRQKRVEAMEKIKEKALDMAKTGRDSLEVRDFVTEAKKELAYELPDEDAFRKAVGATKAYMSKKQK |
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