Basic Information | |
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Taxon OID | 3300034020 Open in IMG/M |
Scaffold ID | Ga0335002_0001504 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20322 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (81.58%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006739 | Metagenome / Metatranscriptome | 365 | Y |
F015719 | Metagenome / Metatranscriptome | 252 | Y |
F022871 | Metagenome | 212 | Y |
F051888 | Metagenome / Metatranscriptome | 143 | Y |
F067677 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335002_0001504_11403_11876 | F051888 | N/A | MTSFALSSSTQSFSCSHENPATSLDTRDEYCVECNLLQEGSSAQYALDFQEINRSEQESEPSLSIDIPDEKGYGHQWTNRDGEYLDGAYDITDRPPGWLFLGKHVFPMFKQDELNAYLALPSWATVCSTCHYQINKYMGCLTCHISYRNTKYLYWIS |
Ga0335002_0001504_11888_12268 | F067677 | N/A | MYLVTAWDFPLRLVLGEKSLSVKEIIMNKFSFENARVNKVWDNKNRFNLGILDSRAVAQPDGSYQSVFVASRIVTTANPDHLEFIRKNLVDNSEAVVNINGYMETKAGKKPGTWYDNLVITEIALA |
Ga0335002_0001504_3_311 | F006739 | N/A | KGYQAKATIATPRQRIMQFPVYCFDIETDRYNVVSGYEGKALTRLQLLENVEENGDVVTWQDLTTGESRQVVIEQISFTRMTPPDKRFDGFGGVIEITIRTV |
Ga0335002_0001504_3818_4129 | F022871 | AGGAG | MSELENVWDNDEEFWDFVGENRRMVGLSVSDGQGLDILNALRDIYLTIEKEPDSAMRMLTLLGTVIYASSIGEGKQFTDEIQVAAAMEQFDTNIKDILDEESR |
Ga0335002_0001504_7429_7875 | F015719 | AGGAG | MYYTEVDGTEPTISIQVKDTKYTFTNDSLVRLIEEKENLRTELVQVERKLKSTQFDVKEFFQSRYETDQSEILCEVDDVNSLLKDIGSDELTKSWSATVTITATVTGVEAPNAEAAREIIEDAFEINLTVDGDVWVDDLTVESCYPEA |
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