NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334998_0220303

Scaffold Ga0334998_0220303


Overview

Basic Information
Taxon OID3300034019 Open in IMG/M
Scaffold IDGa0334998_0220303 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1168
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017998Metagenome237Y
F018001Metagenome237Y
F038234Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0334998_0220303_356_634F038234N/AMLTIQNIDSLKGTYVGHWKIHYVAELQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDTFIRFLIDELI
Ga0334998_0220303_639_983F018001N/AMLTIQNIEYLKGKELNDWKVLDAGEDLRAQLGKNIYLLTFARIDRDGNVLDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIDTIVWPAVNIRNKDAFFGRILYKINEEYYKRK
Ga0334998_0220303_98_337F017998N/AMNLERLDLEKYELLELERNNTIADPLYQQWMSELKVSSSYSDREGIIRANELNNQYEYSHLAGNKSTKFSVSSILSILK

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