NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334998_0171408

Scaffold Ga0334998_0171408


Overview

Basic Information
Taxon OID3300034019 Open in IMG/M
Scaffold IDGa0334998_0171408 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1372
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038092Metagenome166Y
F092047Metagenome / Metatranscriptome107N
F103248Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0334998_0171408_196_519F092047N/AMLTLKNFTNIEGMEFQLSSGNKFLIGIAKDEGEHYTFGVFPILENDVPSIKDAIVYKLYKDILYGGDYYHGYWLESPKMKRIVKVKPENLTLKNFILELHIQTGMIC
Ga0334998_0171408_521_820F103248N/AMLTIKNIHKIINITSPLPFKWYINTVDELPDDLYGFSVLIGNIQEIFYLNRESQYMSGRNEPVYRLYKNFDQSKINRWLSLHQISPYFIKQAINDMLNK
Ga0334998_0171408_824_1270F038092N/AMPIIPTPPPMTLRQKIQTLQGINNMTPQNNVVQQIRDIAEEQAKIALAELMKQETEKRKQTFLTIENIDKIKGHKYSEWLTVGGVMESDTHYEFTLLDEKHTQVETILLHRKQTSDKRYIMEYNNQTLWITKDRLSTIAGIIECMQEI
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