Scaffold Ga0334998_0002836

Overview

Basic Information

• Taxon OID: 3300034019
• Scaffold ID: Ga0334998_0002836
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13968
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (78.79%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003540	Metagenome	480	Y
F044440	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334998_0002836_1394_1735	F044440	GGA	MRYAMRRDLNDSEITAAVKAAGFSVIDYTKAGLGIPDKLAIKPLPQIGENNERVFFICWLEIKSASGRLSETQQIARAVWEPRGEWIEAREADQTVRDLMQRYEAKIKPECAR
Ga0334998_0002836_9842_10099	F003540	GAGG	MNMQKIVDMLFPVLLAAVGWLLTEIASFNNRLLSVESKMPALISAEGVPTDSPISAERRHKMKEEIYTDIHDLQVRVKLIEERNK