NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334998_0001226

Scaffold Ga0334998_0001226


Overview

Basic Information
Taxon OID3300034019 Open in IMG/M
Scaffold IDGa0334998_0001226 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21396
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (87.10%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F020162Metagenome / Metatranscriptome225Y
F026539Metagenome / Metatranscriptome197Y
F037190Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0334998_0001226_11449_11667F020162GAGGVDDEQDYVPRSITLADFLVVLSGFAVNIIRAIEMLASEILDLAVYNANRKTKVSRVWEQFTSDLEKMEDNNG
Ga0334998_0001226_16748_16897F037190AGGAMDRYLLIELGSEGIAFETAQFDFYASWLGIGIAIASLVAYRIIKSRKGA
Ga0334998_0001226_18217_18387F002827AGGAGMNKEYYQAKADLCRDLAIQQMTEGDSKEAGANLIRMVNALNELQLINYKEEKREAN
Ga0334998_0001226_18374_18601F005146AGGAGGVKLTNFYEVMDRKGDISWGGASPSEAVEWFRRGLDNSIFVSVWNEQDIENPVLVTDKIEVTALVLATITSERSRG
Ga0334998_0001226_20597_21229F026539GAGMTETHPSAGDIVFSVARTIFSRYRNFVEREDVVQECWSWYYSRAEHFNQLLSEENTVQRVINEKRMAWQMKRHAERYARREKATRSGYKLTDEAFYDTVVIAQLLPHVIASVVDNTVLEQAQNLINDGQPKKQSAPAEGGNLLATLIDIKKAYLKLDVVDKDILIKRYHENLTLQELASYLECAISTADRRCQSSLRKLQNNLGGDSPYQ

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