Basic Information | |
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Taxon OID | 3300034019 Open in IMG/M |
Scaffold ID | Ga0334998_0001226 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21396 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (87.10%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002827 | Metagenome / Metatranscriptome | 527 | Y |
F005146 | Metagenome / Metatranscriptome | 410 | Y |
F020162 | Metagenome / Metatranscriptome | 225 | Y |
F026539 | Metagenome / Metatranscriptome | 197 | Y |
F037190 | Metagenome / Metatranscriptome | 168 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334998_0001226_11449_11667 | F020162 | GAGG | VDDEQDYVPRSITLADFLVVLSGFAVNIIRAIEMLASEILDLAVYNANRKTKVSRVWEQFTSDLEKMEDNNG |
Ga0334998_0001226_16748_16897 | F037190 | AGGA | MDRYLLIELGSEGIAFETAQFDFYASWLGIGIAIASLVAYRIIKSRKGA |
Ga0334998_0001226_18217_18387 | F002827 | AGGAG | MNKEYYQAKADLCRDLAIQQMTEGDSKEAGANLIRMVNALNELQLINYKEEKREAN |
Ga0334998_0001226_18374_18601 | F005146 | AGGAGG | VKLTNFYEVMDRKGDISWGGASPSEAVEWFRRGLDNSIFVSVWNEQDIENPVLVTDKIEVTALVLATITSERSRG |
Ga0334998_0001226_20597_21229 | F026539 | GAG | MTETHPSAGDIVFSVARTIFSRYRNFVEREDVVQECWSWYYSRAEHFNQLLSEENTVQRVINEKRMAWQMKRHAERYARREKATRSGYKLTDEAFYDTVVIAQLLPHVIASVVDNTVLEQAQNLINDGQPKKQSAPAEGGNLLATLIDIKKAYLKLDVVDKDILIKRYHENLTLQELASYLECAISTADRRCQSSLRKLQNNLGGDSPYQ |
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