Scaffold Ga0334985_0257461

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0257461
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043935	Metagenome	155	Y
F060914	Metagenome	132	N
F098687	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0257461_305_538	F060914	GAGG	MKRLIKVRSDISSSIFPIQLYQVDDYFTAEENGVELFRFKSQHLCSIKAKELIRRRKNEKNARIIEDINELKVQGIL
Ga0334985_0257461_47_220	F098687	N/A	MISGSIENDSHYEFVCDNGNFEETCSYETFKEAVEDGKWGGMEEWEMLFEESEEIEG
Ga0334985_0257461_795_1115	F043935	AGAAG	MTKKEIEIFDDQIQYLCNHYQDRIKIMRQTLGINTNFNFLREVETIENLYKSLLELRKTEKGTYFSNGTSGWTLVYLRNKKNYKHGEKFVLKTYFSFIEVDNYDSHN