Basic Information | |
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Taxon OID | 3300034018 Open in IMG/M |
Scaffold ID | Ga0334985_0018934 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5362 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011938 | Metagenome / Metatranscriptome | 285 | Y |
F013878 | Metagenome / Metatranscriptome | 267 | Y |
F017101 | Metagenome / Metatranscriptome | 242 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334985_0018934_1061_1282 | F017101 | GAG | MQDRMTVLESIIQDVAKALFQKWANALPEDQRSEETIASLNKNATESTYFVVKMFMDKFNEAAEQLKSQPDEQ |
Ga0334985_0018934_3957_4154 | F011938 | GGAGG | VKEYYDVVSVVYIHSEQCHGTVEKLGAWASIVKYNKNGMEYSELMENEEFSIIDEIVFKHIEESQ |
Ga0334985_0018934_4740_4967 | F013878 | AGG | MLNLTELGVEVFMKKAKYVTPFWDNYDLVIWKKDINGFTNVKGMFKENTWGTTERISVDSDGIWKLPTKHVKHFK |
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