Scaffold Ga0334985_0009976

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0009976
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7531
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012010	Metagenome / Metatranscriptome	284	Y
F030058	Metagenome / Metatranscriptome	186	Y
F071153	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0009976_1_234	F030058	N/A	MGLSTTDLGNGGNGLPKTIAPGNHVLKINKVELEDFKFIDGASHLLLHVETNPIEGFEGFFIDKDDESKGRYAGQIGR
Ga0334985_0009976_2826_3416	F012010	N/A	MEEIFNKLIKENLTPNTYYVLHCIREKVVPNNFVNKELECKRLQKDQWLTESLQLTSKSIIFMDEINGYFKRSKKKTSKDLMGSDFLVKIQEYVNIFPNRKLDSGKYARVNVKNLEPAFRWFFENYDYDWDTILKATEKYVDEYSVRNYKYIRNSQYFIRKQNVDKTFESDLATYCELVNTNPDGEGDVYFKERIV
Ga0334985_0009976_4434_4811	F071153	N/A	MFSGKFIKKDGKITYASPQDKLAYEIFVDKIQEGQKVEMYIGLANTDHSIAQLAKVHACIRELAKESGYSFDEMKVLIKEKSGLCYDGGDAILCKSFSDCSKDEIALAIEACIEIGRENYNINLT