NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0009976

Scaffold Ga0334985_0009976


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0009976 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7531
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012010Metagenome / Metatranscriptome284Y
F030058Metagenome / Metatranscriptome186Y
F071153Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0009976_1_234F030058N/AMGLSTTDLGNGGNGLPKTIAPGNHVLKINKVELEDFKFIDGASHLLLHVETNPIEGFEGFFIDKDDESKGRYAGQIGR
Ga0334985_0009976_2826_3416F012010N/AMEEIFNKLIKENLTPNTYYVLHCIREKVVPNNFVNKELECKRLQKDQWLTESLQLTSKSIIFMDEINGYFKRSKKKTSKDLMGSDFLVKIQEYVNIFPNRKLDSGKYARVNVKNLEPAFRWFFENYDYDWDTILKATEKYVDEYSVRNYKYIRNSQYFIRKQNVDKTFESDLATYCELVNTNPDGEGDVYFKERIV
Ga0334985_0009976_4434_4811F071153N/AMFSGKFIKKDGKITYASPQDKLAYEIFVDKIQEGQKVEMYIGLANTDHSIAQLAKVHACIRELAKESGYSFDEMKVLIKEKSGLCYDGGDAILCKSFSDCSKDEIALAIEACIEIGRENYNINLT

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