Scaffold Ga0334985_0001970

Overview

Basic Information

• Taxon OID: 3300034018
• Scaffold ID: Ga0334985_0001970
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16445
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F008815	Metagenome / Metatranscriptome	327	Y
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334985_0001970_14879_15475	F001640	N/A	MRYLFLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAIQSLVTDAERQSNTLAIHAKPIITKGKAVQRINYYNDLHVQISGKPVYFTTAQRDTAKFIGDWRLNFNGEIIDGVIELNLNKRLIFNPDNGKVYTISTNLLLSTFTNQVSFAFNGVKYDLYKYADGKFATVDGDVRLIKLE
Ga0334985_0001970_7376_9598	F101173	AGTAG	MAVRFETTVYNEKGRKINVAIKDNVFSGMTYSFDTISLSLQYDSESQQGAERFTPIIGSSCNLSLLINNNDLQTLLLDIGLAVEGRFTMHLTAYEDDNTTVSFNWYGYIVTDLVQFEDIPLSIGYVAQISAIDGLGWLKTLDYKSAVGPYNGQDTVVQHILNCLNQLEFVQSELVANSLPVLHTVFNWNENTTAYNADNDYALLTVIQHRAFYHKDTKNNYIYQSCYDVLKKICQTFGARLIFSGNQYWFIQVNEYTRNPSAHRYFKYSALGVQASGTFTFDFTMSNIQTNLPGSDLMRLSGGKWTYYPALKNVVVRYNHFAKQNLLAGVEYNYATNATPITTITPTLDATNADARLSYTGILGFYAQAINPVNFEPFQFVFAVKVASIINSFPLQGFADANWTLGSGWFINNGILEGTIIATVAYYTTFTVTSGRKYYVKIKVDIENSGSLRLRLGGVTKTITESGDYDYVILSTNTDTLQLDSLSSPGFTGKIKSLQVKQENKYLKRNVNYTSGFNFQLEAASWENTFYEYEFNTETITADAAFVAYKTITFDTLDIPESAEYVWEMRLKNMRNEAGTNVSGNFSISYLLSSNYLEFLPTGAVSGQSDILEYGSDNDDKSSTIFSLDTYLGDGPSKTTDGGLKVLESGTYENSSSWDVSSGSGFNNVTQLLVNEVIRGQLTPKLRMVDMPFQNLSVDNPYLPHKVIEYSSGYYVFERGSFDLKTEIWQGDYFKIELDA
Ga0334985_0001970_9591_9962	F008815	N/A	MPNYTERTVLSKPRDFNEVANNAGSGGVVNNNVTETINNVTVNGSAVSIFNQEFIAASSNVLTWTQNNGVLPVTNLNAAIHVYQNGQKLIDSQYVITAPATITIDINTHYDGSNYIVFAINII