Scaffold Ga0334991_0233574

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0233574
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 778
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F013755	Metagenome / Metatranscriptome	268	Y
F085593	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0233574_1_402	F085593	N/A	MSTHIKIENQTEVPILVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHQGDIDWANVKAMSSDDLNATFGSAYTSAKSSTKSWNGMSSCIF
Ga0334991_0233574_399_599	F001259	AGGAGG	MKDSFAFIYLHAWNGLVRVESLDTAKHISGNPEWKHVATINPHVVLEQILRAKGKDRNQIIKHLLT
Ga0334991_0233574_596_775	F013755	N/A	MVSDTPISDSTAHNIAELGMLCRRLERLAAVRLRYITQLETENDAMRADLLLWNEQEVK