NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0080580

Scaffold Ga0334991_0080580


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0080580 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1607
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F018001Metagenome237Y
F038234Metagenome166Y
F062757Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0080580_1308_1607F007690N/AMLTIKNIHKLVNQPIWDGWEVNDIYKGDHNDTYIFELVKRKPLPMHNGLCTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILV
Ga0334991_0080580_375_710F062757N/AMLHIQNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDIHCNGPIGNRIDGCTISLNRRGEIQRTLGRPVELAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKK
Ga0334991_0080580_712_1053F018001N/AMLTIKNIEYLKGQELNDWKVLDAGQDLRAQLGKNIYLLTFARLDKGVMQDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIDTIVWPAVNIRNKDAFFGRILYKINEEYYKRK
Ga0334991_0080580_92_370F038234N/AMLTIKNIDSLKGTYVGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGGYLMYCQETGKALDSMPIEDIRDRDTFIRFLIDELI

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