NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0056921

Scaffold Ga0334991_0056921


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0056921 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2012
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046381Metagenome151Y
F068847Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0056921_1709_2011F068847N/ATQTSNRNFDAVIEAVKKVITNPNKYLTKERFELVRDYYKVRKQKDEILRYKSVNQWINPTGWSVYDILDEVNLKKIKEVYSKYYDFDKFYISNDKKEFKK
Ga0334991_0056921_2_343F046381N/ASATPKSFQKNAEDIANNINTKYSDSIVIPMDIDVHPGCTTTPESVEEIATDMYNQFCELAERQGIPNSIRCAYSIGELSNIDVDSTHHLGNDEVMVRVGRFLDESDEPGIYNI
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