Scaffold Ga0334991_0020727

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0020727
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3849
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004696	Metagenome	427	Y
F005299	Metagenome / Metatranscriptome	405	Y
F025025	Metagenome	203	Y
F032282	Metagenome	180	Y
F059972	Metagenome	133	Y
F103233	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0020727_10_207	F059972	N/A	MKTLKELLLNVYEGHCERLPDETDEDYLTRCGNQQFNPFGSVADRSNIPLTMKKKIVVPVPIKKK
Ga0334991_0020727_2381_2833	F005299	N/A	MNYYQIVAFAQQLKQNKNKNMSNNITPNHLIDPIDTPNEIWESKVGYDSANKRMIAKVYKHLYIVMELMSKPSWSAIIREMLIEDGKINKVSLNGYYSTIRKNLKDIGVIQYNGRKGLSKGPNWDRFFGEEDWSWFITNTNSGGYGTIIK
Ga0334991_0020727_2840_3241	F025025	N/A	MSKVKVKEIKLGKRGYKAIVKNKKLNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYVGEIETEMKMDKLETSLIKNVLSKKEKKELLAANVMEGALVSNKAILDTAYSTFYNGGSLSVETTTANGEDTDK
Ga0334991_0020727_3310_3477	F103233	N/A	MSKGQTDIELYEALIELGYDFGEYDTEDFDEDGFAETAVNLGYRWDETKKEWFNK
Ga0334991_0020727_728_949	F032282	N/A	MSNSNSIQDIVHSIDIEKYHSIESEREKVMADAEFQKWCSDMRIGSRVEVKDFRATELMQQYTNYPKWVARMF
Ga0334991_0020727_993_1223	F004696	N/A	MEYAIKKLKQDEVVLMKKIKSLQDGKPKWAASAQLDEIRSAIKLLERYESITEQDIEDEDEYLKQVFEMQPPKAQA