Scaffold Ga0334991_0001385

Overview

Basic Information

• Taxon OID: 3300034013
• Scaffold ID: Ga0334991_0001385
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21194
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001464	Metagenome / Metatranscriptome	689	Y
F002501	Metagenome / Metatranscriptome	553	Y
F005000	Metagenome / Metatranscriptome	415	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334991_0001385_11639_11824	F002501	N/A	MKCNRCQGRVFVDRVFSQKLHVELFCLLCGKRWMINKDTSALGKWLEKREKIQLKAFGIS
Ga0334991_0001385_11872_12252	F001464	N/A	MVAWCYPDKKRLLYSYSQVLKTMENAYSTSQVAQMLGKHKVTIEDYILDGKIRYPQKVYPIGNPDSTWYKFMYSESDIMDIHEFILESGYSKDMPSKNEMRALLKHNTILYTKTNEGNFVPVWKAE
Ga0334991_0001385_14101_14391	F005000	GAG	VTHQNIKRFQIRVEFLDDSDMIRIKKQYDDLLVGQMKDAGYTRVLDIDPAFSVEFDGQTWKFLMTLHGVYVGKKKAWQLEGITQGKLIHRNTPLPT